Paper published with Amsterdam UMC developed smart manuscript platform

June 28, 2021

This month the first smart manuscript created with FiglinQ was published in Nature. FiglinQ is a new collaborative platform, developed by Amsterdam UMC researcher Dr. Przemek Krawczyk, that enables a new approach to scientific publication.

Using FiglinQ, scientist can create their own smart manuscripts with shareable, interactive, data-connected charts and figures. This could provide a long-awaited solution for open, transparent and reproducible science.

The volume of research data that is generated by scientists, is growing exponentially. If all this data could be reused, scientific output would multiply. Most published data are, however, not findable, accessible, interoperable or reusable (FAIR). This restricts or even prohibits their use. There is an urgent need for FAIRification of research data, but this is extremely challenging and there are no universal standards or platforms.

Amsterdam UMC researcher Dr. Przemek Krawzcyk, from the department of Medical Biology, is working to solve this problem. He has developed FiglinQ, an online platform that enables scientist to publish their research data in so-called smart manuscripts. Smart manuscripts contain shareable, interactive charts and figures that are permanently linked to the underlying data. By facilitating data analysis and visualization in scientific charts (a process common to all active scientists), FiglinQ will thus build a science-wide, uniform repository of chart-associated data.

Although Przemek has already conceived the idea earlier, actual development of FiglinQ has only started this year, funded by an IXA Proof of Concept grant. This month the first major milestone was achieved: for the time a smart manuscript generated with FiglinQ was published in Nature.

Click here for the paper and here for the smart manuscript version.

More news

Funding from KWF for palliative cancer patients in meaning-making at home

The diagnosis of incurable cancer profoundly disrupts patients’ lives, often causing existential crises and a sense of lost purpose. The KWF-funded project “In Search of Stories” (ISOS) aimed to support these patients by partnering them with spiritual counsellors and professional artists. This co-creation process proved highly beneficial. New funding from KWF Dutch Cancer Society supports […]

News

Impact in education and beyond: VU researcher Laura Rupp secures Comenius Leadership Fellow grant

Laura Rupp has been awarded the Comenius Leadership Fellow grant for a three-year period. This grant of 500,000 Euros, will fund a project titled “Global English and International Dutch on the VU Campus”. Over the years, Rupp has successfully reached more than 100,000 people online worldwide, teaching how to understand diverse English accents and speak […]

News

Max Nieuwdorp’s innovative research on gut microbes: a path to combat fatty liver disease

Internist Max Nieuwdorp, of Amsterdam UMC, discovered a few years ago that the microorganisms in the intestines of many overweight people produce alcohol to an increased extent. Breaking down excessive alcohol leads to fatty liver disease, which in turn poses a risk of serious conditions such as diabetes and cardiovascular disease. Nieuwdorp has now received an ERC Advanced Grant of 2.5 million euros for a major study into the underlying causes of this excessive alcohol production.  

News
All news